Fandom: Stargate Atlantis
Title: Of Two Hours
Author: Tigs
Characters: Radek Zelenka, McKay/Sheppard
Length: Short
Quote: Some mornings, though, when the circumstances of the previous evening are correct, Radek knows that he can plot and make careful plans. Knows that he’ll be able to get to the labs early, that he’ll have a full two hours before Rodney arrives and that gives him time to poke at his projects all by himself, in peace and quiet.

Now this is what I expect of SGA. And their crossovers with NCIS.

Fandom: Stargate: Atlantis/NCIS
Title: Agent Afloat Atlantis
Author: Mhalachai
Spoilers/Warnings: Up to season 5 of NCIS, with scattered mentions of slash. Also hints at Sam/Jack.
Characters: NCIS: Ziva David, ensemble | SGA: Colonel Sheppard, Dr. McKay, Major Lorne, many others + General O'Neill/Colonel Carter
Length: Long
Summary: Ziva's new assignment certainly isn't what she expected.

Notes: Holy. You know that there're a ton of Stargate/NCIS crossovers (funny, that), but this is how it should go. With appropriate gamuts into both universes, very Stargate-like plot twists but in NCIS flavour...and everyone is perfect and the reveal of the Stargate program (or at least, relevant bits *coughsSKYNET IN MTACcoughs*) goes down just the way it really should even though how these shows fit together like this I have no idea...

Suspenseful adventure-mystery that combines these edges of both universes to make a trip that really hits the spot. (And Ziva as the protagonist was an unexpected but very apt and well explained choice.) This would have been a great AU season finale two-parter...especially at the heels of "Aliyah".

Also, you know I \o/!ed at the S/J, because we finally get to see them interact from a really outside and peripheral perspective, and the inevitable planetary crisis that interrupts their 'fishing trip' again from the crisis' perspective, for once. Not that I wouldn't want to read what they were up to while I was absolutely riveted by what was going down back at NCIS HQ...

Crossovers

Fandom: Star Trek: Deep Space Nine/Doctor Who
Title: An Element of Blank
Author: Carmen Sandiego (Teaspoon)
Era: pre-"Rose"
Characters: (Doctor Who) The Doctor (Ninth), many DS9 characters
Length: Short
Summary: Wormholes, pubs, darts and a big fight scene. Written for the 2005 Multiverse challenge.

Fandom: Harry Potter/Doctor Who
Title: Exterminatus
Author: Casira
Genre: Humour
Characters: Harry Potter: Sirius Black, James and Lily Potter.
Length: Short

Fandom: Stargate SG-1/Doctor Who
Title: Hok'taur
Author: spastasmagoria
Genre: Adventure
Characters: SG-1: SG-1, Nirrti. Doctor Who: The Doctor (Ninth).
Length: Long
Summary: Nirrti's experiments into building a super-host have lead her to a certain Time Lord. SG-1 and the Doctor stop her from creating a host capable of command over time and space.

Title: Out of Africa
Author: loneraven
Characters: SG-1: Daniel Jackson. Doctor Who: The Doctor (Eighth).
Length: Short

Fandom: Heroes/Doctor Who
Title: Once Upon A Time
Author: selenak
Genre: Adventure, angst.
Characters: Heroes: Peter and Nathan Petrelli. Doctor Who: Martha Jones, Donna Noble.
Spoilers: Heroes season 2, Doctor Who series III.
Length: Medium.

Fandom: Stargate Atlantis/Doctor Who
Title: Burning A Hole Right Through
Genre: Adventure, angst.
Characters: Stargate Atlantis: Teyla, ensemble. Doctor Who: Martha Jones.
Length: Medium.
Summary: It's the end of the world as they know it, and they feel fine.

Fandom: Stargate Atlantis/NUMB3RS
Title: Classified
Author: Dira Sudis
Genre: Adventure
Characters: Stargate Atlantis: Ensemble. NUMB3RS: Don and Charlie Eppes.
Length: Medium

Fandom: Doctor Who/Discworld
Title: Interlibrary Loan
Author: DameRuth
Genre: Humour
Characters: Doctor Who: The Doctor (Ninth), Rose Tyler. Discworld: The Librarian.
Length: Short
Note: Part I of "The L-Space Trilogy".

(Multifandom) Fanfiction.net favourites list

Obviously this doesn't contain everything, only those stories archived on FF.net.

My FF.net profile (click Hide Bio on top right and click Favorite Stories)

Fanfiction author personal masterficlists (multifandom)

Doctor Who (2005- ): (all contain majority Doctor/Rose)
Michelle V.
Secrets of Obsession (Fayth)
Camilla Sandman

Stargate Atlantis:
Eretria's Midnight Tea
Sholio's City on the Ocean's Edge

Stargate SG-1:
Selmak.org (Dedicated exclusively to Selmak, Jacob, George and Bra'tac; as well as their respective actors.)
Dietcokechic's Fanfiction
Moonshayde
Gail R. Delaney (Sam/Jack)
Michelle V. (Sam/Jack, also links to more ship authors)
Jo R. (Sam/Jack)
Alli Snow (Sam/Jack)
Suz (Sam/Jack)