Fandom: NUMB3RS/Doctor Who
Title: More Things in Heaven and Earth
Author: astrogirl2
Characters: Dr. Lawrence Fleinhardt | Ninth Doctor, Rose
Length: Short
Spoilers: Mild-to-moderate spoilers for Numb3rs season 3. None for Who.
Summary: "My own suspicion," said the great naturalist J.B.S. Haldane, "is that the universe is not only queerer than we suppose, but queerer than we can suppose."

(and I have this exact quote written in my old agenda...)

Fandom: Bones
Title: all the pretty little horses
Author: Kyra Rivers
Character: Dr. Zack Addy, ensemble
Length: Short
Summary: Heart in a box, Zack', you think, and out loud you say, 'Doctor Saroyan, the small intestine is removed.' Zack is haunted by a case.

Notes: Weird POV and slightly creepy, but the voice and view of Zack comes through very well. (There are not nearly enough gen ensemble fics, I tell you, let alone ones with Zack. Needless to say, this is precisely why I am searching for this type of fic.)

Fandom: Bones
Title: Ty Nant in a Clear Glass Bottle
Author: Dira Sudis
Characters: Dr. Jack Hodgins/Angela Montenegro
Length: Short
Summary: Jack didn't spend the night at Angela's place.

Fandom: Bones
Title: Angie at Dawn (Just Like Nicky Hopkins)
Author: lostakasha
Characters: Angela Montenegro/Dr. Jack Hodgins
Length: Short
Spoilers: "Aliens in a Spaceship" (tag)

Fandom: Bones
Title: Want to Screw Up
Author: Voleuse
Characters: Ensemble cast (gen)
Length: Short
Summary: There's a bluebird in my heart that wants to get out, but I'm too clever.

I've been looking for fic like this for a very, very long time.

Fandom: Doctor Who
Title: It'll Be Alright
Author: sarah531
Characters: Trisha Delaney, Mickey Smith, Shireen
Length: short
Spoilers: vaguely for "Aliens of London"/"World War Three"
Summary: For the past year, Trisha Delaney had noticed the signs.
Quote:

On the Christmas Day that Rose had missed, Trisha's mother had been in a funny mood. "You should go to Jackie Tyler's place," she said. "You should bring her some of our cake...tell her it'll be alright..."

"It won't be alright for her," Trisha said, very quietly.

"None of that. She's probably sittin' up there all on her own. Can you imagine it? You should go."

Trisha didn't like meeting people. Especially if they were likely to be on their own and crying. "I don't know her. And she probably doesn't like me."

"Shut up and go, Trisha."

But she refused politely over and over again, and in the end nobody went.

You'll have read it right, and it'll be beautiful.

Fandom: Doctor Who/Magic School Bus
Title: Valerie for forgetfulness
Author: ClocketPatch
Genre: Introspection
Character: Valerie Felicity Frizzle
Length: Short
Summary: Her students said she was magical.

Crossovers

Fandom: Star Trek: Deep Space Nine/Doctor Who
Title: An Element of Blank
Author: Carmen Sandiego (Teaspoon)
Era: pre-"Rose"
Characters: (Doctor Who) The Doctor (Ninth), many DS9 characters
Length: Short
Summary: Wormholes, pubs, darts and a big fight scene. Written for the 2005 Multiverse challenge.

Fandom: Harry Potter/Doctor Who
Title: Exterminatus
Author: Casira
Genre: Humour
Characters: Harry Potter: Sirius Black, James and Lily Potter.
Length: Short

Fandom: Stargate SG-1/Doctor Who
Title: Hok'taur
Author: spastasmagoria
Genre: Adventure
Characters: SG-1: SG-1, Nirrti. Doctor Who: The Doctor (Ninth).
Length: Long
Summary: Nirrti's experiments into building a super-host have lead her to a certain Time Lord. SG-1 and the Doctor stop her from creating a host capable of command over time and space.

Title: Out of Africa
Author: loneraven
Characters: SG-1: Daniel Jackson. Doctor Who: The Doctor (Eighth).
Length: Short

Fandom: Heroes/Doctor Who
Title: Once Upon A Time
Author: selenak
Genre: Adventure, angst.
Characters: Heroes: Peter and Nathan Petrelli. Doctor Who: Martha Jones, Donna Noble.
Spoilers: Heroes season 2, Doctor Who series III.
Length: Medium.

Fandom: Stargate Atlantis/Doctor Who
Title: Burning A Hole Right Through
Genre: Adventure, angst.
Characters: Stargate Atlantis: Teyla, ensemble. Doctor Who: Martha Jones.
Length: Medium.
Summary: It's the end of the world as they know it, and they feel fine.

Fandom: Stargate Atlantis/NUMB3RS
Title: Classified
Author: Dira Sudis
Genre: Adventure
Characters: Stargate Atlantis: Ensemble. NUMB3RS: Don and Charlie Eppes.
Length: Medium

Fandom: Doctor Who/Discworld
Title: Interlibrary Loan
Author: DameRuth
Genre: Humour
Characters: Doctor Who: The Doctor (Ninth), Rose Tyler. Discworld: The Librarian.
Length: Short
Note: Part I of "The L-Space Trilogy".

Fandom: Young Wizards

Title: More Things In Heaven and Earth
Author: Kara
Genre: Introspection This Contains Religion
Character: Helena Rodriguez
Length: Short/Medium
Spoilers: helps to know Helena's [sketchy] background up to book 8
Summary: When she finds out that Kit is a wizard, Helena goes to the only place she can to find answers: the church.
Quote:

It was hard to understand how blind Mama and Papi were to it. Carmela ate it up, but she was attracted to any new and shiny bauble she saw. But her parents--her infallible, if somewhat unenlightened parents--they should've seen what Kit was dealing with. What they had to save her hermano from...

Fandom: Heroes

Title: The Hiatus Continuations
Author: sam_storyteller
Genre: Action, adventure, humour, angst...Gen-ish, well enough, if you prefer to skip the cutscenes
Characters: Ensemble (including Claude, as a main character, and the inevitable Doctor Who jokes)
Length: Long (21 chapters)
Spoilers: Season 1
Summary: A new side of Claude, a new family for Claire, a new job for Jessica, and a New York for Ando.

Epic, this is, and my personal canon whether I'm aware of it or not. Has 'shippy and slashy undertones, but these are easily ignored.

Title: they don't make 'em like they used to
Author: trollprincess
Characters: Nathan, fifteen years ago [...]
Length: Short
Spoilers: "Distractions"
Summary: Fifteen years ago they were young and idealistic, and maybe that was their problem from the start.

He doesn’t want his daughter to know only of his ability what she gleans from when he sweeps her into his arms at the first sign of danger and flies away. He wants her to see the beauty in it, not the easy escape route.

Other recommended authors: died_in_odessa (Black Tom's Well, Sweet Molly Malone, The Battle of Marathon), selenak (Dreaming, Runaways)

Contrast: Point, counterpoint.

Fandom: Doctor Who

Title: Notes on the Domestication of Birds
Author: nostalgia
Pairing: Tenth Doctor/Rose
Length: Long (5 chapters, 20 000 words)
Spoilers: General series I and II.
Summary: He doesn't do domestic.

Title: Clockwork
Author: Meredith
Pairing: Alt!Ninth Doctor/Rose
Length: Short
Spoilers: "Doomsday", "Human Nature"/"Family of Blood" and general series III.
Summary: The battle's won, and he's losing her. But he wasn't fooling anybody, like he promised: it's worth it, to him. Even this.

These balance each other well, following similar main themes but the first lays it out as general fandom sees it, while the second offers an alternate look (and universe).